All software programs produced by our lab may very well be downloaded and utilised totally free of charge by academic and also other non-profit researchers. Business use of the ScanAlyze, Cluster and/or TreeView executable and/or supply code requries a license from Stanford University. For advice regarding how to get hold of a license,
Office 2007 Standard, make sure you click on here.
Commercial utilization of the GMEP software system demands a license from Lawrence Berkeley National Lab.
For data regarding how to acquire a license, please get hold of LBNL's Solutions Transfer Division. Register Right here Registration is complimentary,
Office Standard 2010 Key, and it is utilized to track usage and to furnish application updates. Registration isn't required to download software programs.
Microarray Image Evaluation ScanAlyze [Download] [Previous versions]:
Operation fluorescent photographs of microarrays. Includes semi-automatic definition of grids and complicated pixel and spot analyses. Outputs to tab-delimited text files for transfer to any database. Created by Michael Eisen. For Windows only. Manual. Supply Code.
Existing edition 2.50. Up to date November 27,2002.
Cluster Evaluation and Visualization Cluster and TreeView are an integrated pair of programs for analyzing and visualizing the outcomes of complex microarray experiments. The two created by Michael Eisen.
Cluster [Download] [Previous versions]: Complete many different different kinds of cluster analysis along with other sorts of processing on enormous microarray datasets. Currently contains hierarchical clustering, self-organizing maps (SOMs), k-means clustering,
Office 2010 Keygen, principal element evaluation.Hierarchical clustering techniques described in Eisen et al. (1998) PNAS 95:14863. For Windows only.
Recent edition two.11. .
Manual. Resource Code. Demo Info.
Michiel de Hoon with the University of Tokyo has put together a model of Cluster (termed Cluster 3.0) that implements identical algorithms as my software,
Office Pro 2007, but will run on Windows, Mac OS X, Linux and UNIX. It can be readily available right here.
FuzzyK [Download]
FuzzyK is really a C++ command line plan that should accomplish fuzzy k-means clustering on gene expression information. See Gasch AP and Eisen MB (2002). Exploring the conditional coregulation of yeast gene expression as a result of fuzzy k-means clustering. Genome Biology three(11), 1-22.
TreeView [Download] [Previous versions]: Graphically browse results of clustering as well as other analyses from Cluster. Supports tree-based and image based mostly browsing of hierarchical trees. Different output formats for generation of pictures for publications. For Windows only.
Present-day version one.60. Updated December six, 2002. Maple Tree [Download]
Maple Tree is usually a java-based, open resource, cross-platform visualization device to graphically browse the outcomes of clustering analyses from our Cluster and Fuzzy K clustering software package, and lots of other clustering and evaluation applications.
Maple Tree was designed by Lisa Simirenko within our lab.
Mixed Expression Information and Sequence Analysis GMEP [Download] (out there for Unix only): Compute genome-mean expression profiles from expression
and sequence information. See Chiang et al. Bioinformatics 17(S1):49-55.
Sequence Analysis GATA [Download] (platform independent): Graphic Alignment Instrument for Comparative Sequence Evaluation. GATA was designed by David Nix within our lab.
TFEM [Download](ANSI C code): Transcription Aspect Expectation Maximization,
Windows 7 Product Key, an algorithm for detecting DNA regulatory motifs by incorperating positional developments in information and facts content material.